Hi Andrew,
it will depend on how you have defined your Site Coordinate system.
Then if you go to the Crop and Download mode, you will see 3 options for the Coordinate system to be used:
- Site Coordinate system
- Spatial Reference system
- Dataset
Here is a related Knowledge Base article for Crop and Download. And additionally
here is the link to the documentation on how to define a Site Coordinate system (default and advanced modes).
If you have any issues specific to your data, please open a support case with us, so that we can check this more closely.
Thank you and regards,
Tatiana